When you have a super fund missing from a file layout, please check the following fields:
Go to WageEasy, Setup, Superannuation Funds.
Highlight the Fund that is not appearing and click Edit.
Go to the Delivery Tab and check that the Delivery Mode is File.
If it is set to File, then check that the File Format and File Location are set to the same as your other Funds.
Correct as needed and reproduce your Super File.